Hi,
i've the same problem. I suppose that the right way is to uninstall Certificate Authority, then try to rename the server.
After that you can rename domain and server name.
I've tryed this operation on a Windows 2003 Standard and it works
Next step after verifying that DNS works fine and to remove the previous zone.
At the end you need to reinstall Certification Authority and reassign the correct SSL Certificate to Default Web Sites.
I'm going to do this operation on a virtual machine to try...
I hope that this few steps can help you.
Sincerely
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